## Reading layer `EMODnet_HA_Energy_WindFarms_pg_20231124' from data source 
##   `C:\Users\schroll\Documents\stage_M2\1.data\EMODnet_HA_Energy_WindFarms_20231124' 
##   using driver `ESRI Shapefile'
## Simple feature collection with 571 features and 12 fields
## Geometry type: MULTIPOLYGON
## Dimension:     XY
## Bounding box:  xmin: -16.58968 ymin: 27.73303 xmax: 24.73779 ymax: 65.47042
## Geodetic CRS:  WGS 84
##         ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/format_rsf_data_for_nimble.R
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## visible FALSE                                                                        
##         ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/get_new_id.R
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##         ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/make_prediction.R
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##         ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/plot_PPC_Nmixture.R
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## visible FALSE                                                               
##         ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/plot_prediction.R
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##         ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/prepare_data_Nmix.R
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##         ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/run_integrated_Nmix_RSF.R
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## visible FALSE                                                                     
##         ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/run_Nmixture.R
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##         ~/stage_M2/2.code/pt2_telemetry_and_count/R_func/run_RSF.R
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## visible FALSE

Scopoli shearwater

mean sd 2.5% 50% 97.5% Rhat n.eff
beta_pop[1] -0.4327124 1.0157122 -2.4422543 -0.4311353 1.5446993 1.00 187650
beta_pop[2] 1.8188154 1.0580780 -0.2415637 1.8116698 3.8978652 1.05 77954
beta_pop[3] -1.0978761 0.9411197 -2.9205353 -1.1060197 0.7751233 1.01 76942
beta_pop[4] 0.5760877 1.0044775 -1.3871598 0.5756934 2.5431357 1.01 169310
beta_pop[5] 1.2737545 0.9004211 -0.5284986 1.2866840 2.9978175 1.01 15409
sd_pop[1] 71.5519548 16.2558311 34.1665872 73.4851222 97.2322029 2.21 6670
sd_pop[2] 14.1387041 3.5655263 6.6420858 14.2563866 20.9795772 1.95 4108
sd_pop[3] 13.5852981 2.7270439 8.7559434 13.4103739 19.5049075 1.45 1986
sd_pop[4] 33.4710428 9.5700189 11.6133136 34.0799708 50.8012352 2.23 3051
sd_pop[5] 9.6590783 2.4617752 5.7480867 9.3553942 15.1427527 1.59 733

Caugek repro

mean sd 2.5% 50% 97.5% Rhat n.eff
beta_pop[1] -0.6489012 1.0038530 -2.6181677 -0.6495247 1.3148792 1.00 315362
beta_pop[2] -1.5304226 0.9675755 -3.4096964 -1.5354368 0.3778698 1.00 76757
beta_pop[3] -1.9847181 0.6253777 -3.1593214 -2.0050788 -0.6979597 1.00 31152
beta_pop[4] 1.1802241 1.0008141 -0.7843794 1.1818358 3.1328438 1.00 151035
beta_pop[5] -1.0537904 0.9768397 -2.9610893 -1.0582478 0.8699603 1.01 151819
beta_pop[6] -1.9838506 0.8819958 -3.6611295 -2.0027197 -0.2056753 1.01 57612
sd_pop[1] 49.9732746 7.2837278 37.5766411 49.3371547 66.0865630 1.06 5720
sd_pop[2] 13.7043546 2.1802384 9.9902640 13.5123397 18.5371872 1.02 3121
sd_pop[3] 4.2196002 0.7827725 2.8833302 4.1511211 5.9497510 1.25 6011
sd_pop[4] 20.8794118 3.4847542 14.8477306 20.6047632 28.4926956 1.14 6366
sd_pop[5] 17.4187235 2.9843879 12.0202060 17.2813318 23.6935704 1.45 9374
sd_pop[6] 8.8040466 1.7763589 5.8095926 8.6464263 12.7001683 1.13 1710

Caugek hors repro

mean sd 2.5% 50% 97.5% Rhat n.eff
beta_pop[1] -0.6534040 1.0041173 -2.6191246 -0.6513506 1.3196401 1.00 233647
beta_pop[2] -0.3772528 0.4350117 -1.2226255 -0.3820395 0.4968098 1.00 16534
beta_pop[3] 1.5869195 0.8832876 -0.1728527 1.5971441 3.2908425 1.00 43841
beta_pop[4] -0.2018595 0.8269702 -1.8287417 -0.2003541 1.4162018 1.00 62070
beta_pop[5] 0.9473572 0.9909727 -1.0021051 0.9520419 2.8781521 1.00 129290
beta_pop[6] -1.3092712 0.9809919 -3.2208719 -1.3110330 0.6283443 1.00 103732
sd_pop[1] 50.2727843 6.8829385 38.6906702 49.6049043 65.5493562 1.10 5941
sd_pop[2] 2.5224969 0.4463629 1.8083411 2.4679156 3.5454197 1.00 3572
sd_pop[3] 8.9940156 1.4968571 6.5010867 8.8463979 12.3240384 1.03 2482
sd_pop[4] 8.8818026 1.4920351 6.4081811 8.7237080 12.2370154 1.01 1578
sd_pop[5] 24.3014927 3.6715434 18.2192252 23.9307532 32.5399559 1.11 3390
sd_pop[6] 16.5467682 2.4551197 12.3654714 16.3369158 22.0060705 1.12 4849

Leucophee repro

mean sd 2.5% 50% 97.5% Rhat n.eff
beta_pop[1] -0.3856775 1.0018450 -2.341591 -0.3844876 1.5776125 1.00 233149
beta_pop[2] -0.7917408 1.0062766 -2.761520 -0.7903622 1.1777383 1.01 135326
beta_pop[3] -0.1590413 0.9399203 -2.002721 -0.1602506 1.6836232 1.00 89088
beta_pop[4] -0.6655142 0.4435379 -1.520685 -0.6723441 0.2299959 1.02 12877
beta_pop[5] 0.0991829 0.9200481 -1.704589 0.0993362 1.9048968 1.00 63947
sd_pop[1] 78.7892900 12.3630734 51.999849 80.2193628 98.2762191 1.42 5023
sd_pop[2] 31.4448142 6.2151196 19.270438 31.5728591 43.7162038 1.42 2835
sd_pop[3] 16.4397214 2.7403899 11.716373 16.2101549 22.4703095 1.19 1808
sd_pop[4] 2.5169221 0.4934575 1.663225 2.4794394 3.5981045 1.29 4273
sd_pop[5] 13.9076866 2.3366938 9.722073 13.7668383 18.9251870 1.19 2689

Leucophee hors repro

mean sd 2.5% 50% 97.5% Rhat n.eff
beta_pop[1] -0.5816647 1.0036185 -2.5507910 -0.5824685 1.3916672 1.00 228327
beta_pop[2] -1.3005678 0.9285874 -3.0995423 -1.3078504 0.5454040 1.00 48616
beta_pop[3] -0.8586711 0.9414330 -2.6938614 -0.8615665 0.9980929 1.00 66783
beta_pop[4] -0.3208494 0.9279372 -2.1339614 -0.3239974 1.4947700 1.00 57338
beta_pop[5] 1.5789671 0.9969048 -0.3852785 1.5834463 3.5186655 1.01 37721
beta_pop[6] -1.3531414 0.9645815 -3.2286648 -1.3593238 0.5465612 1.01 48976
beta_pop[7] 0.7230061 0.9360654 -1.1259283 0.7254564 2.5453765 1.00 33985
sd_pop[1] 57.5642884 8.2948768 42.9768897 56.9801598 75.6997009 1.02 4887
sd_pop[2] 12.1729504 2.7000116 8.0568063 11.7898521 18.6053965 1.04 631
sd_pop[3] 14.9022577 2.9437510 10.1383250 14.5619455 21.6846547 1.07 819
sd_pop[4] 14.2047295 2.2101458 10.4988706 13.9929674 19.1231669 1.05 2219
sd_pop[5] 14.3101150 2.9060400 8.9202024 14.1614799 20.5276908 1.13 1865
sd_pop[6] 13.1131836 2.3273825 8.6745845 13.0556551 17.9385932 1.22 4471
sd_pop[7] 13.4383945 2.1037711 9.8076203 13.2701091 18.0342260 1.10 3369

yelkouan repro

mean sd 2.5% 50% 97.5% Rhat n.eff
beta_pop[1] -11.1496250 0.2380229 -11.5903953 -11.1596826 -10.6538881 1 96629
beta_pop[2] 0.3444875 0.0895462 0.1701931 0.3438160 0.5222834 1 128175
beta_pop[3] 1.9946944 0.2422810 1.5133118 1.9963239 2.4662203 1 114968
sd_pop[1] 1.6687986 0.1862444 1.3512377 1.6524236 2.0781563 1 23442
sd_pop[2] 0.6661589 0.0707560 0.5430533 0.6609105 0.8190459 1 34945
sd_pop[3] 1.9098772 0.1970146 1.5677573 1.8947562 2.3346508 1 34890

yelkouan repro

mean sd 2.5% 50% 97.5% Rhat n.eff
beta_pop[1] -0.6337381 1.0046091 -2.6088568 -0.6346225 1.3365972 1.00 330419
beta_pop[2] -1.4306650 0.9550956 -3.2762401 -1.4392676 0.4662701 1.00 51767
beta_pop[3] -1.3312870 0.9178998 -3.1130592 -1.3394360 0.4895217 1.00 53395
beta_pop[4] 0.7615803 0.7111972 -0.6483431 0.7670615 2.1437902 1.00 38806
beta_pop[5] -1.0953630 0.8981887 -2.8376038 -1.1018248 0.6859831 1.00 155633
beta_pop[6] 0.9440147 0.7488816 -0.5519260 0.9531435 2.3868365 1.00 26061
sd_pop[1] 51.2970895 7.0601461 39.1074414 50.7290300 66.7489880 1.10 7563
sd_pop[2] 13.2154039 2.6214936 8.7688045 12.9692148 19.0497453 1.10 1018
sd_pop[3] 11.2145058 1.8881618 8.1056178 11.0110677 15.4991115 1.00 2122
sd_pop[4] 5.7108324 0.9658129 4.0869224 5.6188568 7.8759032 1.02 3710
sd_pop[5] 10.9846877 1.7499720 8.0488794 10.8114057 14.8887064 1.04 4312
sd_pop[6] 6.1110539 1.0962193 4.3021027 5.9993900 8.5806730 1.05 2831